S. cerevisiae WU-BLAST2 Search

Datasets updated: May 9, 2009

This form allows BLAST searches of S. cerevisiae sequence datasets. To search multiple fungal sequences, go to the Fungal BLAST search form.

Query Comment (optional, will be added to output for your use):
NOTE: If the input sequence is less than 30 letters you should change the default Cutoff Score value to something less than 100 or you can miss matches.
or
Upload Local TEXT File: FASTA, GCG, and RAW sequence formats are okay
WORD Documents do not work unless saved as TEXT.
Type or Paste a Query Sequence : (FASTA or RAW format, or No Comments, Numbers are okay)

Choose the Appropriate BLAST Program:
Choose one or more Sequence Datasets:
Select or unselect multiple datasets by pressing the Control (PC) or Command (Mac) key while clicking. Selecting a category label selects all datasets in that category.

or

Options: For descriptions of BLAST options and parameters, refer to the BLAST documentation at NCBI.
Output format :
Comparison Matrix :
Cutoff Score (S value) :
Word Length (W value) : Default = 11 for BLASTN, 3 for all others
Expect threshold (E threshold) :
Number of best alignments to show :
Filter options : On Off DUST file for BLASTN, SEG filter for all others

Return to SGD

SGD^tm pages Database Copyright © 1997-2008 The Board of Trustees of Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The SGD project at Stanford University is supported by a Genome Research Resource Grant from the US National Human Genome Research Institute, part of the US National Institutes of Health.