SGD Batch Download Tool

Help

This resource allows simultaneous retrieval of DNA and Protein sequences for a list of Standard gene names or Feature names. Data that can be retrieved using this tool is included in one or more files on our FTP site. If you are interested in retrieving data for a large number of features, please visit our FTP site.

Gene/Feature names can be entered in one of three ways:
1. direct entry
2. upload from a file
3. chromosomal coordinates (enters all features/gene names between these coordinates)

Note: Please do not use Alias Gene names in your input list.
Note about Interactions data: Interaction data is currently provided in Cytoscape format; however, data will be available in other formats (for example, Osprey, PSI-ML) soon. Note that the interaction file will include genes that directly interact with the genes you enter. See the help page for details.




Step 1: Your Input
Option 1. Enter Feature/Standard Gene names (separate by return:)


Examples:
Gene Name - PPN1
ORF - YDR452W
SGDID - S000002860

OR

Upload a file of Feature/Standard Gene names
Option 2. Pick a chromosome

Then enter coordinates (optional):
to

If no coordinates are entered all the features in the selected chromosome will be retrieved.

OR

Upload a file of chromosomal regions (coordinates are optional) with the following tab-separated columns:
chr start_coordinate stop_coordinate
For example:
III 1356 20455
IV 11331 18001
VI 9856 100010
Step 2: Choose the type of data that you want to retrieve (You can select multiple types)
Please check the help page for details on the output file format.
  • Sequence data





  • Other data
    • SGD_Feature.tab file format)
    gene_association file format)

    Cytoscape file format)
    Cytoscape file format)
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    SGDtm pages Database Copyright © 1997-2008 The Board of Trustees of Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The SGD project at Stanford University is supported by a Genome Research Resource Grant from the US National Human Genome Research Institute, part of the US National Institutes of Health.